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prodigy samespots software package version 1.0  (Nonlinear Dynamics)

 
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    Nonlinear Dynamics prodigy samespots software package version 1.0
    Prodigy Samespots Software Package Version 1.0, supplied by Nonlinear Dynamics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/samespot+software+package/prodigy+samespots+software/pmc09124444-76-0-6
    Average 90 stars, based on 1 article reviews
    prodigy samespots software package version 1.0 - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Software:

    Article Title: Responses of the marine diatom Thalassiosira pseudonana to changes in CO 2 concentration: a proteomic approach
    Article Snippet: After fluorescence imaging, gels were washed for 10 min in ultrapure water and post-stained with the ImperialTM Protein Stain (Thermo Scientific, Rockford, USA). .. The Samespot software package (version 4.0.3; nonlinear dynamics) was used to determine protein abundance and statistics based on 2D-DiGE. .. Based on Samespot analysis, spots of interest were excised using a Shimadzu Biotech Xcise System (Champs sur Marne, France) and submitted to trypsin digestion after reduction and alkylation.

    Quantitative Proteomics:

    Article Title: Responses of the marine diatom Thalassiosira pseudonana to changes in CO 2 concentration: a proteomic approach
    Article Snippet: After fluorescence imaging, gels were washed for 10 min in ultrapure water and post-stained with the ImperialTM Protein Stain (Thermo Scientific, Rockford, USA). .. The Samespot software package (version 4.0.3; nonlinear dynamics) was used to determine protein abundance and statistics based on 2D-DiGE. .. Based on Samespot analysis, spots of interest were excised using a Shimadzu Biotech Xcise System (Champs sur Marne, France) and submitted to trypsin digestion after reduction and alkylation.



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    Representation of reference image showing an example image of spot detection on untreated CAMA-1 cells control Reference image used for image analysis that was carried out with <t>Progenesis</t> <t>SameSpot</t> software. Isoelectric point pI range is shown at the top, while the direction of the second-dimension SDS-PAGE is represented by an arrow on the left
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    Image Search Results


    Representation of reference image showing an example image of spot detection on untreated CAMA-1 cells control Reference image used for image analysis that was carried out with Progenesis SameSpot software. Isoelectric point pI range is shown at the top, while the direction of the second-dimension SDS-PAGE is represented by an arrow on the left

    Journal: International Journal of Health Sciences

    Article Title: Novel predication of protein biomarkers in interferon-gamma-stimulated breast cancer cells

    doi:

    Figure Lengend Snippet: Representation of reference image showing an example image of spot detection on untreated CAMA-1 cells control Reference image used for image analysis that was carried out with Progenesis SameSpot software. Isoelectric point pI range is shown at the top, while the direction of the second-dimension SDS-PAGE is represented by an arrow on the left

    Article Snippet: Scanned gel images were characterized with Progenesis SameSpot software package (Nonlinear Dynamics Limited, UK).

    Techniques: Control, Software, SDS Page

    Journal: International Journal of Health Sciences

    Article Title: Novel predication of protein biomarkers in interferon-gamma-stimulated breast cancer cells

    doi:

    Figure Lengend Snippet: Representation and comparison of the number of spots in untreated MDA-MB-21 cells control and in IFN-γ-treated MDA-MB-231 cells, identified by progenesis samespot software

    Article Snippet: Scanned gel images were characterized with Progenesis SameSpot software package (Nonlinear Dynamics Limited, UK).

    Techniques: Comparison, Control, Software

    Representative two-dimensional gel images of total cell proteins from CAMA-1 cells untreated and treated with interferon-gamma (IFN-γ). (a) Control (untreated) cells only in 10% FCS medium. (b) Cells treated with 100 IU/ml IFN-γ. (c) Cells treated with 500 IU/ml IFN-γ. (d) Cells treated with 1000 IU/ml IFN-γ. All incubations were for 72 h. In the first dimension, 80 μg total soluble protein was separated on Immobiline IPG strips (18 cm, pH 3–10 NL). Isoelectric focusing was performed using an IPGPhor unit. The second dimension was performed on 12% SDS-PAGE gels, with image analysis carried out using Progenesis SameSpot software. M - Molecular mass standards are shown on the left side (kDa - kiloDaltons). Differentially expressed, user selected protein spots in four gels are marked by red arrows

    Journal: International Journal of Health Sciences

    Article Title: Novel predication of protein biomarkers in interferon-gamma-stimulated breast cancer cells

    doi:

    Figure Lengend Snippet: Representative two-dimensional gel images of total cell proteins from CAMA-1 cells untreated and treated with interferon-gamma (IFN-γ). (a) Control (untreated) cells only in 10% FCS medium. (b) Cells treated with 100 IU/ml IFN-γ. (c) Cells treated with 500 IU/ml IFN-γ. (d) Cells treated with 1000 IU/ml IFN-γ. All incubations were for 72 h. In the first dimension, 80 μg total soluble protein was separated on Immobiline IPG strips (18 cm, pH 3–10 NL). Isoelectric focusing was performed using an IPGPhor unit. The second dimension was performed on 12% SDS-PAGE gels, with image analysis carried out using Progenesis SameSpot software. M - Molecular mass standards are shown on the left side (kDa - kiloDaltons). Differentially expressed, user selected protein spots in four gels are marked by red arrows

    Article Snippet: Scanned gel images were characterized with Progenesis SameSpot software package (Nonlinear Dynamics Limited, UK).

    Techniques: Two-Dimensional Gel Electrophoresis, Control, SDS Page, Software

    Representative two-dimensional gel images of 3,4-methylenedioxyamphetamine-MB-231 total cell proteins from cells untreated and treated with interferon-gamma (IFN-γ) (a) Control (untreated) cells only in 10% FCS medium. (b) Cells treated with 100 IU/ml IFN-γ. (c) Cells treated with 500 IU/ml IFN-γ. (d) Cells treated with 1000 IU/ml IFN-γ. Incubations were for 72 h. In the first dimension, 80 μg total soluble protein was separated on Immobiline IPG strips (18 cm, pH 3–10 NL). Isoelectric focusing was performed on an IPGPhor unit. The second dimension was performed on 12% SDS-PAGE gels, with image analysis carried out with Progenesis SameSpot software. M - Molecular mass standards are shown on the left side (kDa - kiloDaltons). Differentially expressed, user selected protein spots in four gels are marked by red arrows

    Journal: International Journal of Health Sciences

    Article Title: Novel predication of protein biomarkers in interferon-gamma-stimulated breast cancer cells

    doi:

    Figure Lengend Snippet: Representative two-dimensional gel images of 3,4-methylenedioxyamphetamine-MB-231 total cell proteins from cells untreated and treated with interferon-gamma (IFN-γ) (a) Control (untreated) cells only in 10% FCS medium. (b) Cells treated with 100 IU/ml IFN-γ. (c) Cells treated with 500 IU/ml IFN-γ. (d) Cells treated with 1000 IU/ml IFN-γ. Incubations were for 72 h. In the first dimension, 80 μg total soluble protein was separated on Immobiline IPG strips (18 cm, pH 3–10 NL). Isoelectric focusing was performed on an IPGPhor unit. The second dimension was performed on 12% SDS-PAGE gels, with image analysis carried out with Progenesis SameSpot software. M - Molecular mass standards are shown on the left side (kDa - kiloDaltons). Differentially expressed, user selected protein spots in four gels are marked by red arrows

    Article Snippet: Scanned gel images were characterized with Progenesis SameSpot software package (Nonlinear Dynamics Limited, UK).

    Techniques: Two-Dimensional Gel Electrophoresis, Control, SDS Page, Software

    Example of three-dimensional (3D) spot graph analyzed by Progenesis SameSpot software. 3D spot graph showing the difference between untreated (control) and treated CAMA-1 cells treated with different doses of interferon-gamma (IFN-γ). The images show the effect of IFN-γ on breast cancer cells

    Journal: International Journal of Health Sciences

    Article Title: Novel predication of protein biomarkers in interferon-gamma-stimulated breast cancer cells

    doi:

    Figure Lengend Snippet: Example of three-dimensional (3D) spot graph analyzed by Progenesis SameSpot software. 3D spot graph showing the difference between untreated (control) and treated CAMA-1 cells treated with different doses of interferon-gamma (IFN-γ). The images show the effect of IFN-γ on breast cancer cells

    Article Snippet: Scanned gel images were characterized with Progenesis SameSpot software package (Nonlinear Dynamics Limited, UK).

    Techniques: Software, Control